PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g07290.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 125aa    MW: 13896.4 Da    PI: 9.0791
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g07290.4genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-202473255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+taeeAa+a++aa++ ++g
  Vang02g07290.4 24 RYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDAAARDFRG 73
                    59*******.**********8...557**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-142473IPR001471AP2/ERF domain
CDDcd000186.21E-192483No hitNo description
Gene3DG3DSA:3.30.730.104.9E-332482IPR001471AP2/ERF domain
PROSITE profilePS5103224.3022481IPR001471AP2/ERF domain
SMARTSM003801.2E-362487IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-232482IPR016177DNA-binding domain
PRINTSPR003674.5E-122536IPR001471AP2/ERF domain
PRINTSPR003674.5E-124763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MAPSDNRSND VCGSNSTRLD KEIRYRGVRK RPWGRYAAEI RDPGKKTRVW LGTFDTAEEA  60
ARAYDAAARD FRGAKAKTNF PTHAELTHVA QSDSDSSSVV DYERVPHRRV LDLDLNVPPP  120
PEVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-212581360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-212581663ATERF1
3gcc_A7e-212581663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-150AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493609.11e-58PREDICTED: ethylene-responsive transcription factor 4
SwissprotO803401e-41ERF78_ARATH; Ethylene-responsive transcription factor 4
TrEMBLK7LV642e-57K7LV64_SOYBN; Uncharacterized protein
STRINGGLYMA12G26836.16e-57(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.13e-30ethylene responsive element binding factor 4